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    LOC100245016 ethylene-responsive transcription factor ERN1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100245016, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100245016
    Gene description
    ethylene-responsive transcription factor ERN1
    Locus tag
    VIT_00025461001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100245016 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (724500..725312, complement)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (672384..673196, complement)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene mitochondrial dicarboxylate/tricarboxylate transporter DTC Neighboring gene tubulin alpha-5 chain Neighboring gene uncharacterized LOC100265730 Neighboring gene origin of replication complex subunit 1B-like Neighboring gene small nucleolar RNA snoR28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERN1
    Names
    ethylene-responsive transcription factor RAP2-11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      724500..725312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002283591.1 → XP_002283627.1  ethylene-responsive transcription factor ERN1

      See identical proteins and their annotated locations for XP_002283627.1

      UniProtKB/TrEMBL
      A0A438JVQ4, D7SLK5
      Conserved Domains (1) summary
      smart00380
      Location:35 → 96
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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