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    LOC100253856 actin-related protein 2/3 complex subunit 4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100253856, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100253856
    Gene description
    actin-related protein 2/3 complex subunit 4
    Locus tag
    VIT_00020914001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100253856 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (18954033..18973143, complement)
    102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (17250953..17270086, complement)

    Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene protein NO VEIN Neighboring gene protein ACCELERATED CELL DEATH 6-like Neighboring gene uncharacterized LOC100258998 Neighboring gene O-fucosyltransferase 1 Neighboring gene uncharacterized LOC100241872

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Arp2/3 protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 2/3 complex subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

      Range
      18954033..18973143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002273096.5 → XP_002273132.1  actin-related protein 2/3 complex subunit 4

      UniProtKB/TrEMBL
      F6GWI3
      Conserved Domains (1) summary
      pfam05856
      Location:1 → 166
      ARPC4; ARP2/3 complex 20 kDa subunit (ARPC4)
    Nucleotide Protein
    Heading Accession and Version

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