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    LOC100242279 upstream activation factor subunit spp27 [ Vitis vinifera (wine grape) ]

    Gene ID: 100242279, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100242279
    Gene description
    upstream activation factor subunit spp27
    Locus tag
    VIT_00037881001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0003677 GO:0003676 GO:0003917 GO:0003916 GO:0016853 GO:0005634
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    Genomic context

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    See LOC100242279 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (6760935..6764913)
    102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (6798197..6802154)

    Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100257657 Neighboring gene classical arabinogalactan protein 9 Neighboring gene pentatricopeptide repeat-containing protein At5g02860 Neighboring gene (S)-8-oxocitronellyl enol synthase ISY1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    upstream activation factor subunit spp27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

      Range
      6760935..6764913
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002272111.5 → XP_002272147.1  upstream activation factor subunit spp27

      UniProtKB/TrEMBL
      A5AX80, F6H677
      Conserved Domains (1) summary
      pfam02201
      Location:70 → 143
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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