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    LOC100261458 proteasome subunit beta type-5 [ Vitis vinifera (wine grape) ]

    Gene ID: 100261458, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100261458
    Gene description
    proteasome subunit beta type-5
    Locus tag
    VIT_00010375001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100261458 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (24682250..24689263)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (19942730..19949742)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 45 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene receptor protein kinase-like protein ZAR1 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables threonine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-5
    Names
    20S proteasome beta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      24682250..24689263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002264792.5 → XP_002264828.1  proteasome subunit beta type-5

      See identical proteins and their annotated locations for XP_002264828.1

      UniProtKB/TrEMBL
      A0A438DIS1, D7TAR8
      Conserved Domains (2) summary
      PTZ00488
      Location:25 → 261
      PTZ00488; Proteasome subunit beta type-5; Provisional
      cd03761
      Location:56 → 243
      proteasome_beta_type_5; proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...

    2. XM_010657198.2 → XP_010655500.1  proteasome subunit beta type-5

      See identical proteins and their annotated locations for XP_010655500.1

      UniProtKB/TrEMBL
      A0A438DIS1, D7TAR8
      Conserved Domains (2) summary
      PTZ00488
      Location:25 → 261
      PTZ00488; Proteasome subunit beta type-5; Provisional
      cd03761
      Location:56 → 243
      proteasome_beta_type_5; proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...
    Nucleotide Protein
    Heading Accession and Version

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