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    SBPase chloroplast sedoheptulose-1,7-bisphosphatase [ Solanum lycopersicum (tomato) ]

    Gene ID: 100316873, updated on 9-Nov-2023

    Summary

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    Gene symbol
    SBPase
    Gene description
    chloroplast sedoheptulose-1,7-bisphosphatase
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See SBPase in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 5 NC_015442.3 (63659092..63662403)
    102 previous assembly SL2.50 (GCF_000188115.3) 5 NC_015442.2 (62807877..62811188)

    Chromosome 5 - NC_015442.3Genomic Context describing neighboring genes Neighboring gene CTD small phosphatase-like protein Neighboring gene putative serine/threonine-protein kinase-like protein CCR3 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transcription factor DIVARICATA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sedoheptulose-1,7-Bisphosphatase is Involved in Methyl Jasmonate- and Dark-Induced Leaf Senescence in Tomato Plants. Ding F, et al. Int J Mol Sci, 2018 Nov 20. PMID 30463360, Free PMC Article
    2. Changes in SBPase activity influence photosynthetic capacity, growth, and tolerance to chilling stress in transgenic tomato plants. Ding F, et al. Sci Rep, 2016 Sep 2. PMID 27586456, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. repression of SBPase by Methyl Jasmonate and dark treatment plays a role in Jasmonic acid- and dark-induced leaf senescence.
      Title: Sedoheptulose-1,7-Bisphosphatase is Involved in Methyl Jasmonate- and Dark-Induced Leaf Senescence in Tomato Plants.
    2. Collectively, these data suggest that higher level of SBPase activity gives an advantage to photosynthesis, growth and chilling tolerance in tomato plants.
      Title: Changes in SBPase activity influence photosynthetic capacity, growth, and tolerance to chilling stress in transgenic tomato plants.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fructose 1,6-bisphosphate 1-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 1,6-bisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sucrose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplast sedoheptulose-1,7-bisphosphatase
    Names
    COSII_At3g55800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247656.1 → NP_001234585.1  chloroplast sedoheptulose-1,7-bisphosphatase

      See identical proteins and their annotated locations for NP_001234585.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ959073
      UniProtKB/TrEMBL
      A0A3Q7GLK1, C5IU71
      Conserved Domains (1) summary
      PLN02462
      Location:79 → 380
      PLN02462; sedoheptulose-1,7-bisphosphatase

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015442.3 Reference SL3.0 Primary Assembly

      Range
      63659092..63662403
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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