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    LOC7489485 protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7489485, updated on 31-May-2023

    Summary

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    Gene symbol
    LOC7489485
    Gene description
    protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1
    Locus tag
    POPTR_018G116000v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7489485 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (13208794..13210495)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (14416322..14418260)

    Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene probable flavin-containing monooxygenase 1 Neighboring gene uncharacterized methyltransferase At2g41040, chloroplastic Neighboring gene uncharacterized LOC7489486 Neighboring gene uncharacterized LOC112324942

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      13208794..13210495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002324544.3 → XP_002324580.1  protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1

      See identical proteins and their annotated locations for XP_002324580.1

      UniProtKB/TrEMBL
      B9IMM1
      Conserved Domains (1) summary
      pfam04640
      Location:60 → 131
      PLATZ; PLATZ transcription factor
    Nucleotide Protein
    Heading Accession and Version

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