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    LOC7461573 peroxidase 45 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7461573, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7461573
    Gene description
    peroxidase 45
    Locus tag
    POPTR_018G089900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    PRX90
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    Genomic context

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    See LOC7461573 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (10978216..10980090)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (11843312..11845188)

    Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene villin-4 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene uncharacterized LOC7461574 Neighboring gene fructose-bisphosphate aldolase 6, cytosolic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase 45
    Names
    class III peroxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      10978216..10980090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002324427.4 → XP_002324463.1  peroxidase 45

      See identical proteins and their annotated locations for XP_002324463.1

      UniProtKB/TrEMBL
      B9ILW4
      Conserved Domains (1) summary
      cd00693
      Location:26 → 327
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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