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    LOC7457974 protein SLOW WALKER 1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7457974, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7457974
    Gene description
    protein SLOW WALKER 1
    Locus tag
    POPTR_014G135600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7457974 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (9165109..9167137, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (10335919..10337959, complement)

    Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene peroxidase 56-like Neighboring gene NPL4-like protein 1 Neighboring gene nodulin homeobox Neighboring gene serine/threonine-protein phosphatase BSL1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SLOW WALKER 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      9165109..9167137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002321007.4 → XP_002321043.1  protein SLOW WALKER 1

      See identical proteins and their annotated locations for XP_002321043.1

      UniProtKB/TrEMBL
      B9I9Y8
      Conserved Domains (3) summary
      cd00200
      Location:91 → 338
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:57 → 91
      7WD40; WD40 repeat [structural motif]
      pfam09384
      Location:385 → 527
      UTP15_C; UTP15 C terminal
    Nucleotide Protein
    Heading Accession and Version

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