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    LOC7457389 probable WRKY transcription factor 46 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7457389, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7457389
    Gene description
    probable WRKY transcription factor 46
    Locus tag
    POPTR_002G168700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7457389 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (12948878..12951789, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (12778252..12781214, complement)

    Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7457388 Neighboring gene hydroquinone glucosyltransferase Neighboring gene uncharacterized LOC112326465 Neighboring gene transcription factor CPC

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      12948878..12951789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024594264.2 → XP_024450032.1  probable WRKY transcription factor 46 isoform X2

      Conserved Domains (1) summary
      smart00774
      Location:106 → 145
      WRKY; DNA binding domain

    2. XM_002302584.4 → XP_002302620.1  probable WRKY transcription factor 46 isoform X1

      See identical proteins and their annotated locations for XP_002302620.1

      UniProtKB/TrEMBL
      B9GQZ6
      Conserved Domains (1) summary
      smart00774
      Location:128 → 188
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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