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    Synj1 synaptojanin 1 [ Sciurus carolinensis (gray squirrel) ]

    Gene ID: 124992668, updated on 22-Mar-2024

    Summary

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    Gene symbol
    Synj1
    Gene description
    synaptojanin 1
    See related
    EnsemblRapid:ENSSCRG00010009609
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sciurus carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus
    Orthologs
    human mouse all
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    Genomic context

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    See Synj1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mSciCar1.2 (GCF_902686445.1) 9 NC_062221.1 (130184028..130262633, complement)

    Chromosome 9 - NC_062221.1Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene cilia and flagella associated protein 298 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_062221.1 Chromosome 9 Reference mSciCar1.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptojanin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_902686445.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mSciCar1.2

    Genomic

    1. NC_062221.1 Reference mSciCar1.2

      Range
      130184028..130262633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047563774.1 → XP_047419730.1  synaptojanin-1 isoform X1

      Related
      ENSSCRP00010011068.1, ENSSCRT00010012420.1

    2. XM_047563778.1 → XP_047419734.1  synaptojanin-1 isoform X5

    3. XM_047563782.1 → XP_047419738.1  synaptojanin-1 isoform X8

    4. XM_047563776.1 → XP_047419732.1  synaptojanin-1 isoform X3

    5. XM_047563781.1 → XP_047419737.1  synaptojanin-1 isoform X7

    6. XM_047563779.1 → XP_047419735.1  synaptojanin-1 isoform X6

    7. XM_047563777.1 → XP_047419733.1  synaptojanin-1 isoform X4

    8. XM_047563775.1 → XP_047419731.1  synaptojanin-1 isoform X2

    9. XM_047563787.1 → XP_047419743.1  synaptojanin-1 isoform X12

    10. XM_047563786.1 → XP_047419742.1  synaptojanin-1 isoform X11

      Related
      ENSSCRP00010011078.1, ENSSCRT00010012430.1

    11. XM_047563788.1 → XP_047419744.1  synaptojanin-1 isoform X13

    12. XM_047563785.1 → XP_047419741.1  synaptojanin-1 isoform X10

    13. XM_047563783.1 → XP_047419739.1  synaptojanin-1 isoform X9

    14. XM_047563784.1 → XP_047419740.1  synaptojanin-1 isoform X9

    Nucleotide Protein
    Heading Accession and Version

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