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    LOC106605228 apoptosis-associated speck-like protein containing a CARD [ Salmo salar (Atlantic salmon) ]

    Gene ID: 106605228, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106605228
    Gene description
    apoptosis-associated speck-like protein containing a CARD
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    ASC
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    Genomic context

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    See LOC106605228 in Genome Data Viewer
    Location:
    chromosome: ssa05
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (56736026..56737731, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (54114910..54116616, complement)

    Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily E member 1 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 28 Neighboring gene protein C-ets-2 Neighboring gene retroviral integration site protein Fli-1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apoptosis-associated speck-like protein containing a CARD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059446.1 Reference Ssal_v3.1

      Range
      56736026..56737731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014200643.2 → XP_014056118.1  apoptosis-associated speck-like protein containing a CARD

      UniProtKB/TrEMBL
      B9EMM2
      Conserved Domains (1) summary
      cd08330
      Location:15 → 97
      CARD_ASC_NALP1; Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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