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    cic Putative transcription factor capicua [ Drosophila willistoni ]

    Gene ID: 6647448, updated on 6-Jun-2024

    Summary

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    Gene symbol
    cic
    Gene description
    Putative transcription factor capicua
    Locus tag
    Dwil_GK10919
    See related
    EnsemblRapid:LOC6647448
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila willistoni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GK10919; GK10919-PB
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 3R
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current UCI_dwil_1.1 (GCF_018902025.1) 3R NC_061086.1 (18416917..18459992)
    101 previous assembly dwil_caf1 (GCF_000005925.1) Unplaced Scaffold NW_002032853.1 (10717843..10761038, complement)

    Chromosome 3R - NC_061086.1Genomic Context describing neighboring genes Neighboring gene protein O-GlcNAcase Neighboring gene ATP synthase subunit C lysine N-methyltransferase Neighboring gene vasotab Neighboring gene Iron-sulfur cluster assembly enzyme Neighboring gene uncharacterized LOC124462106 Neighboring gene uncharacterized LOC6647287 Neighboring gene uncharacterized LOC6647286

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative transcription factor capicua
    Names
    Dwil\GK10919
    Dwil\GK10919-PB
    dwil_GLEANR_11176

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila willistoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_dwil_1.1

    Genomic

    1. NC_061086.1 Reference UCI_dwil_1.1

      Range
      18416917..18459992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023178801.2 → XP_023034569.1  putative transcription factor capicua isoform X2

      Related
      XP_023034569.1, XM_023178801.2
      Conserved Domains (2) summary
      cd01388
      Location:1304 → 1375
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam16090
      Location:386 → 468
      DUF4819; Domain of unknown function (DUF4819)

    2. XM_023178799.2 → XP_023034567.1  putative transcription factor capicua isoform X1

      Related
      XP_023034567.1, XM_023178799.2
      Conserved Domains (2) summary
      cd01388
      Location:1304 → 1375
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam16090
      Location:386 → 468
      DUF4819; Domain of unknown function (DUF4819)

    3. XM_047013491.1 → XP_046869447.1  putative transcription factor capicua isoform X3

      UniProtKB/TrEMBL
      B4N9G4
      Related
      XP_046869447.1, XM_047013491.1
    Nucleotide Protein
    Heading Accession and Version

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