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    HemF_1 coproporphyrinogen III oxidase [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7203704, updated on 21-Dec-2023

    Summary

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    Gene symbol
    HemF_1
    Gene description
    coproporphyrinogen III oxidase
    Locus tag
    PHATRDRAFT_15068
    Gene type
    protein coding
    RNA name
    coproporphyrinogen III oxidase
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    Location:
    chromosome: 17
    Exon count:
    1
    Sequence:
    Chromosome: 17; NC_011685.1 (623054..623968)

    Chromosome 17 - NC_011685.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011685.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables coproporphyrinogen oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protoporphyrinogen IX biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    coproporphyrinogen III oxidase
    XP_002182874.1
    • eighth step of heme synthesis; although the enzyme is related to chloroplast homologues, no targeting sequences have been found

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011685.1 Reference assembly

      Range
      623054..623968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002182838.1 → XP_002182874.1  coproporphyrinogen III oxidase [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002182874.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8J9T6A5, B7G7A5
      Conserved Domains (1) summary
      pfam01218
      Location:4 → 304
      Coprogen_oxidas; Coproporphyrinogen III oxidase
    Nucleotide Protein
    Heading Accession and Version

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