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    PHATRDRAFT_37234 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7201913, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_37234
    Gene description
    predicted protein
    Locus tag
    PHATRDRAFT_37234
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_37234 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Sequence:
    Chromosome: 12; NC_011680.1 (468608..469453)

    Chromosome 12 - NC_011680.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011680.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine triphosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thiamine diphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thiamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011680.1 Reference assembly

      Range
      468608..469453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002181175.1 → XP_002181211.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002181211.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8J9T422, B7G2I1
      Conserved Domains (1) summary
      cd07758
      Location:41 → 258
      ThTPase; Thiamine Triphosphatase
    Nucleotide Protein
    Heading Accession and Version

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