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    LOC124041947 aspartyl/asparaginyl beta-hydroxylase-like [ Oncorhynchus gorbuscha (pink salmon) ]

    Gene ID: 124041947, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC124041947
    Gene description
    aspartyl/asparaginyl beta-hydroxylase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus gorbuscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC124041947 in Genome Data Viewer
    Location:
    chromosome: LG08
    Exon count:
    13
    Annotation release Status Assembly LG Location
    100 current OgorEven_v1.0 (GCF_021184085.1) LG08 NC_060180.1 (62376158..62404948, complement)

    Linkage Group LG08 - NC_060180.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-2A Neighboring gene chromodomain-helicase-DNA-binding protein 7-like Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_060180.1 Chromosome LG08 Reference OgorEven_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartyl/asparaginyl beta-hydroxylase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus gorbuscha Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OgorEven_v1.0 Primary Assembly

    Genomic

    1. NC_060180.1 Reference OgorEven_v1.0 Primary Assembly

      Range
      62376158..62404948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046360144.1 → XP_046216100.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    2. XM_046360145.1 → XP_046216101.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    3. XM_046360146.1 → XP_046216102.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    4. XM_046360143.1 → XP_046216099.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    5. XM_046360142.1 → XP_046216098.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    RNA

    1. XR_006840016.1 RNA Sequence

    2. XR_006840015.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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