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    LOC111001440 carotenoid isomerooxygenase-like [ Pieris rapae (cabbage white) ]

    Gene ID: 111001440, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC111001440
    Gene description
    carotenoid isomerooxygenase-like
    See related
    EnsemblRapid:ENSPRPG00005007932
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pieris rapae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris
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    Genomic context

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    See LOC111001440 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current ilPieRapa1.1 (GCF_905147795.1) 9 NC_059517.1 (5476276..5482994, complement)
    100 previous assembly P_rapae_3842_assembly_v2 (GCF_001856805.1) Unplaced Scaffold NW_019094060.1 (137772..145914, complement)

    Chromosome 9 - NC_059517.1Genomic Context describing neighboring genes Neighboring gene neuromedin-U receptor 2 Neighboring gene carotenoid isomerooxygenase Neighboring gene malate dehydrogenase-like Neighboring gene Phospholipase C at 21C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The molecular genetic basis of herbivory between butterflies and their host plants. Nallu S, et al. Nat Ecol Evol, 2018 Sep. PMID 30076351, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-carotene 15,15'-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carotenoid dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carotene catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinal metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carotenoid isomerooxygenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pieris rapae Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPieRapa1.1 Primary Assembly

    Genomic

    1. NC_059517.1 Reference ilPieRapa1.1 Primary Assembly

      Range
      5476276..5482994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022271340.2 → XP_022127032.2  carotenoid isomerooxygenase-like

      Related
      ENSPRPP00005011928.1, ENSPRPT00005015250.1
    Nucleotide Protein
    Heading Accession and Version

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