U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC123507108 homeobox protein aristaless-like [ Portunus trituberculatus (swimming crab) ]

    Gene ID: 123507108, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC123507108
    Gene description
    homeobox protein aristaless-like
    See related
    EnsemblRapid:LOC123507108
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Portunus trituberculatus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae; Portuninae; Portunus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC123507108 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM1759143v1 (GCF_017591435.1) 21 NC_059275.1 (6783047..6931431)

    Chromosome 21 - NC_059275.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain-containing protein 6-A-like Neighboring gene uncharacterized LOC123507273 Neighboring gene homeobox protein aristaless-like Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_059275.1 Chromosome 21 Reference ASM1759143v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox protein aristaless-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Portunus trituberculatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1759143v1 Primary Assembly

    Genomic

    1. NC_059275.1 Reference ASM1759143v1 Primary Assembly

      Range
      6783047..6931431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045259675.1 → XP_045115610.1  homeobox protein aristaless-like isoform X1

      Related
      XP_045115610.1, XM_045259675.1

    2. XM_045259676.1 → XP_045115611.1  homeobox protein aristaless-like isoform X2

      Related
      XP_045115611.1, XM_045259676.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases