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    RABEP1 rabaptin, RAB GTPase binding effector protein 1 [ Bubalus bubalis (water buffalo) ]

    Gene ID: 102406916, updated on 10-Mar-2024

    Summary

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    Gene symbol
    RABEP1
    Gene description
    rabaptin, RAB GTPase binding effector protein 1
    See related
    EnsemblRapid:ENSBALG00030008234
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bubalus bubalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
    Orthologs
    human mouse all
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    Genomic context

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    See RABEP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (36843381..36941085)
    102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (36778303..36876011)

    Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene SLP adaptor and CSK interacting membrane protein Neighboring gene uncharacterized LOC102407877 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene nucleoporin 88 Neighboring gene RPA interacting protein Neighboring gene complement C1q binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab GTPase-binding effector protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NDDB_SH_1 Primary Assembly

    Genomic

    1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

      Range
      36843381..36941085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044939396.1 → XP_044795331.1  rab GTPase-binding effector protein 1 isoform X1

      Related
      ENSBALP00030015565.1, ENSBALT00030023189.1
      Conserved Domains (2) summary
      TIGR02168
      Location:134 → 890
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam03528
      Location:9 → 495
      Rabaptin

    2. XM_044939400.1 → XP_044795335.1  rab GTPase-binding effector protein 1 isoform X5

    3. XM_044939397.1 → XP_044795332.1  rab GTPase-binding effector protein 1 isoform X2

      Conserved Domains (2) summary
      TIGR02168
      Location:91 → 847
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam03528
      Location:11 → 452
      Rabaptin

    4. XM_006060038.3 → XP_006060100.1  rab GTPase-binding effector protein 1 isoform X3

      Related
      ENSBALP00030015523.1, ENSBALT00030023133.1
      Conserved Domains (4) summary
      pfam03528
      Location:9 → 495
      Rabaptin; Rabaptin
      pfam09311
      Location:533 → 839
      Rab5-bind; Rabaptin-like protein
      pfam10267
      Location:648 → 782
      Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein
      cl14813
      Location:26 → 157
      GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)

    5. XM_044939399.1 → XP_044795334.1  rab GTPase-binding effector protein 1 isoform X4

      Related
      ENSBALP00030015454.1, ENSBALT00030023041.1
    Nucleotide Protein
    Heading Accession and Version

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