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    Scgdelta sarcoglycan delta [ Cotesia glomerata ]

    Gene ID: 123261072, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Scgdelta
    Gene description
    sarcoglycan delta
    Locus tag
    KQX54_019911
    See related
    EnsemblRapid:LOC123261072
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cotesia glomerata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Ichneumonoidea; Braconidae; Microgastrinae; Cotesia
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Scgdelta in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    12
    Annotation release Status Assembly LG Location
    100 current MPM_Cglom_v2.3 (GCF_020080835.1) LG3 NC_058160.1 (27421250..27645331, complement)

    Linkage Group LG3 - NC_058160.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein phosphatase 1-like Neighboring gene rapamycin-insensitive companion of Tor Neighboring gene uncharacterized LOC123261472 Neighboring gene uncharacterized LOC123261075 Neighboring gene proton channel OtopLc-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058160.1 Chromosome LG3 Reference MPM_Cglom_v2.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differentially expressed genes linked to natural variation in long-term memory formation in Cotesia parasitic wasps. van Vugt JJ, et al. Front Behav Neurosci, 2015. PMID 26557061, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zeta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cotesia glomerata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MPM_Cglom_v2.3

    Genomic

    1. NC_058160.1 Reference MPM_Cglom_v2.3

      Range
      27421250..27645331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044722550.1 → XP_044578485.1  zeta-sarcoglycan isoform X1

      Related
      XP_044578485.1, XM_044722550.1

    2. XM_044722548.1 → XP_044578483.1  zeta-sarcoglycan isoform X1

      Related
      XP_044578483.1, XM_044722548.1

    3. XM_044722549.1 → XP_044578484.1  zeta-sarcoglycan isoform X1

      Related
      XP_044578484.1, XM_044722549.1

    4. XM_044722554.1 → XP_044578489.1  zeta-sarcoglycan isoform X2

      Related
      XP_044578489.1, XM_044722554.1

    5. XM_044722553.1 → XP_044578488.1  zeta-sarcoglycan isoform X2

      Related
      XP_044578488.1, XM_044722553.1

    6. XM_044722552.1 → XP_044578487.1  zeta-sarcoglycan isoform X2

      Related
      XP_044578487.1, XM_044722552.1

    7. XM_044722555.1 → XP_044578490.1  zeta-sarcoglycan isoform X2

      Related
      XP_044578490.1, XM_044722555.1

    8. XM_044722551.1 → XP_044578486.1  zeta-sarcoglycan isoform X2

      Related
      XP_044578486.1, XM_044722551.1
    Nucleotide Protein
    Heading Accession and Version

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