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    LOC123210214 hydroxyproline O-galactosyltransferase HPGT1-like [ Mangifera indica (mango) ]

    Gene ID: 123210214, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123210214
    Gene description
    hydroxyproline O-galactosyltransferase HPGT1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mangifera indica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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    Genomic context

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    See LOC123210214 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current CATAS_Mindica_2.1 (GCF_011075055.1) 3 NC_058139.1 (1027097..1031753, complement)

    Chromosome 3 - NC_058139.1Genomic Context describing neighboring genes Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene V-type proton ATPase subunit E Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058139.1 Chromosome 3 Reference CATAS_Mindica_2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxyproline O-galactosyltransferase HPGT1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CATAS_Mindica_2.1

    Genomic

    1. NC_058139.1 Reference CATAS_Mindica_2.1

      Range
      1027097..1031753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044628459.1 → XP_044484394.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X1

      Conserved Domains (1) summary
      PLN03193
      Location:1 → 341
      PLN03193; beta-1,3-galactosyltransferase; Provisional

    2. XM_044628460.1 → XP_044484395.1  hydroxyproline O-galactosyltransferase HPGT1-like isoform X2

      Conserved Domains (1) summary
      PLN03193
      Location:1 → 271
      PLN03193; beta-1,3-galactosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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