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    LOC122870109 toll-like receptor 2 type-2 [ Siniperca chuatsi (mandarin fish) ]

    Gene ID: 122870109, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC122870109
    Gene description
    toll-like receptor 2 type-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Siniperca chuatsi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
    Also known as
    TLR2a
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    Genomic context

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    See LOC122870109 in Genome Data Viewer
    Location:
    chromosome: LG22
    Exon count:
    12
    Annotation release Status Assembly LG Location
    100 current ASM2008510v1 (GCF_020085105.1) LG22 NC_058063.1 (22222854..22238052, complement)

    Linkage Group LG22 - NC_058063.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 175 Neighboring gene uncharacterized LOC122870707 Neighboring gene ladderlectin-like Neighboring gene fibrinogen alpha chain-like Neighboring gene fibrinogen beta chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058063.1 Chromosome LG22 Reference ASM2008510v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triacyl lipopeptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in toll-like receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    toll-like receptor 2 type-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2008510v1 Primary Assembly

    Genomic

    1. NC_058063.1 Reference ASM2008510v1 Primary Assembly

      Range
      22222854..22238052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044183902.1 → XP_044039837.1  toll-like receptor 2 type-2

      Conserved Domains (4) summary
      smart00255
      Location:653 → 808
      TIR; Toll - interleukin 1 - resistance
      COG4886
      Location:320 → 551
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:362 → 390
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:38 → 381
      internalin_A; class 1 internalin InlA
    Nucleotide Protein
    Heading Accession and Version

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