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    tab1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 [ Siniperca chuatsi (mandarin fish) ]

    Gene ID: 122871523, updated on 22-Mar-2024

    Summary

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    Gene symbol
    tab1
    Gene description
    TGF-beta activated kinase 1/MAP3K7 binding protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Siniperca chuatsi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
    Orthologs
    human zebrafish all
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    Genomic context

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    See tab1 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    11
    Annotation release Status Assembly LG Location
    100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (5833850..5852681)

    Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene synaptogyrin-1-like Neighboring gene intraflagellar transport 27 homolog (Chlamydomonas) Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase b Neighboring gene uncharacterized LOC122871575 Neighboring gene C1q and TNF related 6b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TGF-beta-activated kinase 1 and MAP3K7-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2008510v1 Primary Assembly

    Genomic

    1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

      Range
      5833850..5852681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044186731.1 → XP_044042666.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X1

      Conserved Domains (1) summary
      cd00143
      Location:34 → 342
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    2. XM_044186738.1 → XP_044042673.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X2

      Conserved Domains (1) summary
      cd00143
      Location:34 → 342
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    Nucleotide Protein
    Heading Accession and Version

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