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    LOC110601492 peroxidase 5 [ Manihot esculenta (cassava) ]

    Gene ID: 110601492, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC110601492
    Gene description
    peroxidase 5
    Locus tag
    MANES_01G044000v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC110601492 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 1 NC_035161.2 (8796292..8797656, complement)
    100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG1 NC_035161.1 (7317606..7318767, complement)

    Chromosome 1 - NC_035161.2Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 2 Neighboring gene F-box protein FBW2-like Neighboring gene uncharacterized LOC110625913 Neighboring gene heavy metal-associated isoprenylated plant protein 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035161.2 Reference M.esculenta_v8 Primary Assembly

      Range
      8796292..8797656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021738645.2 → XP_021594337.2  peroxidase 5

      UniProtKB/TrEMBL
      A0A2C9WI62
      Conserved Domains (1) summary
      cd00693
      Location:28 → 329
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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