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    smpB SsrA-binding protein SmpB [ Burkholderia vietnamiensis ]

    Gene ID: 69528738, updated on 6-Jun-2024

    Summary

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    Gene symbol
    smpB
    Gene description
    SsrA-binding protein SmpB
    Locus tag
    WJ01_RS28375
    Gene type
    protein coding
    Organism
    Burkholderia vietnamiensis (strain: FL-2-3-10-S3-D0)
    Lineage
    Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
    Old locus tag
    WJ01_28810
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    Genomic context

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    NZ_LOWL01000059.1Genomic Context describing neighboring genes Neighboring gene RnfH family protein Neighboring gene type II toxin-antitoxin system RatA family toxin Neighboring gene SPFH domain-containing protein Neighboring gene NfeD family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_LOWL01000059.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
    2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
    3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
    4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
    5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    SsrA-binding protein SmpB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_LOWL01000059.1 Reference assembly

      Range
      163300..163746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_006478511.1 MULTISPECIES: SsrA-binding protein SmpB [Burkholderia]

      See identical proteins and their annotated locations for WP_006478511.1

      UniProtKB/Swiss-Prot
      A0K8C3, A4JF55, Q1BHG2
      UniProtKB/TrEMBL
      A0A071MP95, A0A084DA68, A0A095DW88, A0A124Q3E6, A0A1B4NSS6, A0A1I0HJ86, A0A1K1NME4, A0A228HXZ9, A0A2U9SJG2, A0A318IRA4, A0A364GMJ2, A0A365QZF1, A0A3N7ZTG3, A0A495YMT8, A0A4S5D8A8, A0A6P2S464, B1JUD0, B4EC78, I2DNB7, U2HDM8
      Conserved Domains (1) summary
      PRK05422
      Location:1 → 146
      smpB; SsrA-binding protein SmpB
    Nucleotide Protein
    Heading Accession and Version