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    DDX4 DEAD-box helicase 4 [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102933166, updated on 10-Mar-2024

    Summary

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    Gene symbol
    DDX4
    Gene description
    DEAD-box helicase 4
    See related
    EnsemblRapid:ENSCMYG00015020102
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Orthologs
    human mouse all
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    Genomic context

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    See DDX4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 5 NC_051245.2 (34365303..34472278)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 6 NC_051246.1 (34365437..34472278)

    Chromosome 5 - NC_051245.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122466038 Neighboring gene phospholipid phosphatase 1 Neighboring gene solute carrier family 38 member 9 Neighboring gene interleukin 31 receptor A Neighboring gene interleukin 6 cytokine family signal transducer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_051245.2 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      34365303..34472278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043546902.1 → XP_043402837.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    2. XM_043546907.1 → XP_043402842.1  probable ATP-dependent RNA helicase DDX4 isoform X3

      Related
      ENSCMYP00015030719.1, ENSCMYT00015037828.1
      Conserved Domains (2) summary
      cd18787
      Location:464 → 593
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:195 → 458
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    3. XM_027828366.3 → XP_027684167.2  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    4. XM_027828369.3 → XP_027684170.2  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    5. XM_043546920.1 → XP_043402855.1  probable ATP-dependent RNA helicase DDX4 isoform X14

      Conserved Domains (2) summary
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
      cl38915
      Location:480 → 537
      DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases

    6. XM_043546905.1 → XP_043402840.1  probable ATP-dependent RNA helicase DDX4 isoform X3

      Conserved Domains (2) summary
      cd18787
      Location:464 → 593
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:195 → 458
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    7. XM_043546911.1 → XP_043402846.1  probable ATP-dependent RNA helicase DDX4 isoform X6

      Conserved Domains (2) summary
      cd18787
      Location:435 → 564
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:166 → 429
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    8. XM_043546914.1 → XP_043402849.1  probable ATP-dependent RNA helicase DDX4 isoform X9

      Conserved Domains (2) summary
      PTZ00110
      Location:59 → 595
      PTZ00110; helicase; Provisional
      cd18052
      Location:153 → 416
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    9. XM_043546918.1 → XP_043402853.1  probable ATP-dependent RNA helicase DDX4 isoform X12

      Conserved Domains (2) summary
      cd18787
      Location:406 → 535
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:137 → 400
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    10. XM_043546904.1 → XP_043402839.1  probable ATP-dependent RNA helicase DDX4 isoform X2

      Related
      ENSCMYP00015030711.1, ENSCMYT00015037818.1
      Conserved Domains (2) summary
      cd18787
      Location:465 → 594
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:196 → 459
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    11. XM_043546916.1 → XP_043402851.1  probable ATP-dependent RNA helicase DDX4 isoform X10

      Related
      ENSCMYP00015030714.1, ENSCMYT00015037823.1
      Conserved Domains (2) summary
      cd18787
      Location:420 → 549
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:151 → 414
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    12. XM_043546910.1 → XP_043402845.1  probable ATP-dependent RNA helicase DDX4 isoform X5

      Conserved Domains (2) summary
      cd18787
      Location:448 → 577
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:179 → 442
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    13. XM_043546921.1 → XP_043402856.1  probable ATP-dependent RNA helicase DDX4 isoform X15

      Conserved Domains (2) summary
      cd18052
      Location:179 → 442
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
      cl38915
      Location:448 → 505
      DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases

    14. XM_043546919.1 → XP_043402854.1  probable ATP-dependent RNA helicase DDX4 isoform X13

      Conserved Domains (2) summary
      cd18787
      Location:403 → 532
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:134 → 397
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    15. XM_043546906.1 → XP_043402841.1  probable ATP-dependent RNA helicase DDX4 isoform X3

      Conserved Domains (2) summary
      cd18787
      Location:464 → 593
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:195 → 458
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    16. XM_043546915.1 → XP_043402850.1  probable ATP-dependent RNA helicase DDX4 isoform X9

      Conserved Domains (2) summary
      PTZ00110
      Location:59 → 595
      PTZ00110; helicase; Provisional
      cd18052
      Location:153 → 416
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    17. XM_043546909.1 → XP_043402844.1  probable ATP-dependent RNA helicase DDX4 isoform X4

      Conserved Domains (2) summary
      cd18787
      Location:463 → 592
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:194 → 457
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    18. XM_043546912.1 → XP_043402847.1  probable ATP-dependent RNA helicase DDX4 isoform X7

      Conserved Domains (2) summary
      cd18787
      Location:432 → 561
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:163 → 426
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    19. XM_043546908.1 → XP_043402843.1  probable ATP-dependent RNA helicase DDX4 isoform X3

      Conserved Domains (2) summary
      cd18787
      Location:464 → 593
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:195 → 458
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    20. XM_043546903.1 → XP_043402838.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Related
      ENSCMYP00015030698.1, ENSCMYT00015037800.1
      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    21. XM_043546900.1 → XP_043402835.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    22. XM_043546901.1 → XP_043402836.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    23. XM_043546913.1 → XP_043402848.1  probable ATP-dependent RNA helicase DDX4 isoform X8

      Conserved Domains (2) summary
      cd18787
      Location:424 → 553
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:155 → 418
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    24. XM_043546917.1 → XP_043402852.1  probable ATP-dependent RNA helicase DDX4 isoform X11

      Conserved Domains (2) summary
      cd18787
      Location:407 → 536
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:138 → 401
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
    Nucleotide Protein
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