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    CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Prionailurus bengalensis (leopard cat) ]

    Gene ID: 122493001, updated on 22-Mar-2024

    Summary

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    Gene symbol
    CSGALNACT2
    Gene description
    chondroitin sulfate N-acetylgalactosaminyltransferase 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prionailurus bengalensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus
    Orthologs
    human mouse all
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    Genomic context

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    See CSGALNACT2 in Genome Data Viewer
    Location:
    chromosome: D2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current Fcat_Pben_1.1_paternal_pri (GCF_016509475.1) D2 NC_057351.1 (49370645..49417176, complement)

    Chromosome D2 - NC_057351.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 258-like Neighboring gene RasGEF domain family member 1A Neighboring gene ret proto-oncogene Neighboring gene uncharacterized LOC122493540

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057351.1 Chromosome D2 Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chondroitin sulfate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroitin sulfate N-acetylgalactosaminyltransferase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prionailurus bengalensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

    Genomic

    1. NC_057351.1 Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

      Range
      49370645..49417176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043596929.1 → XP_043452864.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

      Conserved Domains (1) summary
      cl11394
      Location:404 → 451
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_043596928.1 → XP_043452863.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

      Conserved Domains (1) summary
      cl11394
      Location:438 → 485
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    3. XM_043596931.1 → XP_043452866.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

    4. XM_043596930.1 → XP_043452865.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    5. XM_043596932.1 → XP_043452867.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X5

    6. XM_043596933.1 → XP_043452868.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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