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    sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Puntigrus tetrazona (Sumatra barb) ]

    Gene ID: 122341250, updated on 8-May-2024

    Summary

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    Gene symbol
    sgcd
    Gene description
    sarcoglycan, delta (dystrophin-associated glycoprotein)
    See related
    EnsemblRapid:ENSPRZG00000006024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puntigrus tetrazona
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
    Orthologs
    human zebrafish all
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    Genomic context

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    See sgcd in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current ASM1883169v1 (GCF_018831695.1) Unplaced Scaffold NW_025048767.1 (131456..358238, complement)

    NW_025048767.1Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, cytoplasmic-like Neighboring gene uncharacterized LOC122341248

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025048767 Unplaced Scaffold Reference ASM1883169v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1883169v1 Primary Assembly

    Genomic

    1. NW_025048767.1 Reference ASM1883169v1 Primary Assembly

      Range
      131456..358238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043234619.1 → XP_043090554.1  delta-sarcoglycan isoform X2

      Related
      ENSPRZP00000005311.1, ENSPRZT00000009372.1

    2. XM_043234621.1 → XP_043090556.1  delta-sarcoglycan isoform X2

    3. XM_043234620.1 → XP_043090555.1  delta-sarcoglycan isoform X2

      Related
      ENSPRZP00000005324.1, ENSPRZT00000009385.1

    4. XM_043234618.1 → XP_043090553.1  delta-sarcoglycan isoform X1

      Related
      ENSPRZP00000005316.1, ENSPRZT00000009377.1
    Nucleotide Protein
    Heading Accession and Version

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