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    LOC122259280 sodium-dependent serotonin transporter-like [ Penaeus japonicus ]

    Gene ID: 122259280, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC122259280
    Gene description
    sodium-dependent serotonin transporter-like
    See related
    EnsemblRapid:LOC122259280
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Penaeus japonicus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC122259280 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current Mj_TUMSAT_v1.0 (GCF_017312705.1) Unplaced Scaffold NW_025032233.1 (105400..174692)

    NW_025032233.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122259279 Neighboring gene Rad17 checkpoint clamp loader component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025032233 Unplaced Scaffold Reference Mj_TUMSAT_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: sodium-dependent serotonin transporter-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Penaeus japonicus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mj_TUMSAT_v1.0 Primary Assembly

    Genomic

    1. NW_025032233.1 Reference Mj_TUMSAT_v1.0 Primary Assembly

      Range
      105400..174692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043025932.1 → XP_042881866.1  LOW QUALITY PROTEIN: sodium-dependent serotonin transporter-like

      Related
      XP_042881866.1, XM_043025932.1
      Conserved Domains (1) summary
      cd11497
      Location:175 → 711
      SLC6sbd_SERT-like; Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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