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    seta SET nuclear proto-oncogene a [ Thunnus maccoyii (southern bluefin tuna) ]

    Gene ID: 121904725, updated on 8-May-2024

    Summary

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    Gene symbol
    seta
    Gene description
    SET nuclear proto-oncogene a
    See related
    EnsemblRapid:ENSTMYG00005005187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thunnus maccoyii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
    Orthologs
    zebrafish all
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    Genomic context

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    See seta in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fThuMac1.1 (GCF_910596095.1) 9 NC_056541.1 (4161515..4165468, complement)

    Chromosome 9 - NC_056541.1Genomic Context describing neighboring genes Neighboring gene outer dense fiber protein 2-like Neighboring gene uncharacterized LOC121904726 Neighboring gene serine/threonine-protein kinase N2-like Neighboring gene palmitoyltransferase ZDHHC12-B-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056541.1 Chromosome 9 Reference fThuMac1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SET nuclear proto-oncogene a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thunnus maccoyii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThuMac1.1 Primary Assembly

    Genomic

    1. NC_056541.1 Reference fThuMac1.1 Primary Assembly

      Range
      4161515..4165468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042422611.1 → XP_042278545.1  SET nuclear proto-oncogene a

      Related
      ENSTMYP00005011489.1, ENSTMYT00005013055.1
      Conserved Domains (1) summary
      pfam00956
      Location:32 → 221
      NAP; Nucleosome assembly protein (NAP)
    Nucleotide Protein
    Heading Accession and Version

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