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    Sh3rf2 SH3 domain containing ring finger 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

    Gene ID: 102926288, updated on 10-Mar-2024

    Summary

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    Gene symbol
    Sh3rf2
    Gene description
    SH3 domain containing ring finger 2
    See related
    Ensembl:ENSPEMG00000000187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus maniculatus bairdii (sub-species: bairdii)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
    Orthologs
    human mouse all
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    Genomic context

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    See Sh3rf2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current HU_Pman_2.1.3 (GCF_003704035.1) 19 NC_056026.1 (31846569..31951425)
    101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501128.1 (4874153..4992599, complement)

    Chromosome 19 - NC_056026.1Genomic Context describing neighboring genes Neighboring gene PRELI domain containing 2 Neighboring gene glutaredoxin and cysteine rich domain containing 2 Neighboring gene uncharacterized LOC121823874 Neighboring gene PLAC8 like 1 Neighboring gene leucyl-tRNA synthetase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase 1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SH3RF2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HU_Pman_2.1.3 Primary Assembly

    Genomic

    1. NC_056026.1 Reference HU_Pman_2.1.3 Primary Assembly

      Range
      31846569..31951425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042264407.1 → XP_042120341.1  E3 ubiquitin-protein ligase SH3RF2

      UniProtKB/TrEMBL
      A0A8C8SXZ4
      Conserved Domains (4) summary
      cd11784
      Location:387 → 441
      SH3_SH3RF2_3; Third Src Homology 3 domain of SH3 domain containing ring finger 2
      cd11929
      Location:128 → 181
      SH3_SH3RF2_1; First Src Homology 3 domain of SH3 domain containing ring finger 2
      cd11932
      Location:191 → 247
      SH3_SH3RF2_2; Second Src Homology 3 domain of SH3 domain containing ring finger 2
      cd16749
      Location:11 → 55
      RING-HC_SH3RF2; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 2 (SH3RF2) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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