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    abca1b ATP-binding cassette, sub-family A (ABC1), member 1B [ Chelmon rostratus (copperband butterflyfish) ]

    Gene ID: 121612109, updated on 22-Mar-2024

    Summary

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    Gene symbol
    abca1b
    Gene description
    ATP-binding cassette, sub-family A (ABC1), member 1B
    See related
    EnsemblRapid:ENSCRTG00005010694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelmon rostratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae; Chelmon
    Orthologs
    zebrafish all
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    Genomic context

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    See abca1b in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    100 current fCheRos1.pri (GCF_017976325.1) 9 NC_055666.1 (29066099..29108369)

    Chromosome 9 - NC_055666.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 2 Neighboring gene solute carrier family 44 member 1b Neighboring gene nipsnap homolog 3A (C. elegans) Neighboring gene nitric oxide-associated protein 1-like Neighboring gene RE1-silencing transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055666.1 Chromosome 9 Reference fCheRos1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase ABCA1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelmon rostratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fCheRos1.pri Primary Assembly

    Genomic

    1. NC_055666.1 Reference fCheRos1.pri Primary Assembly

      Range
      29066099..29108369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041944864.1 → XP_041800798.1  phospholipid-transporting ATPase ABCA1b isoform X1

      Related
      ENSCRTP00005029280.1, ENSCRTT00005029422.1
      Conserved Domains (1) summary
      TIGR01257
      Location:1 → 2259
      rim_protein; retinal-specific rim ABC transporter

    2. XM_041944865.1 → XP_041800799.1  phospholipid-transporting ATPase ABCA1b isoform X2

      Related
      ENSCRTP00005029315.1, ENSCRTT00005029456.1
      Conserved Domains (1) summary
      TIGR01257
      Location:1 → 2253
      rim_protein; retinal-specific rim ABC transporter
    Nucleotide Protein
    Heading Accession and Version

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