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    PSMD4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

    Gene ID: 121337563, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PSMD4
    Gene description
    proteasome 26S subunit ubiquitin receptor, non-ATPase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onychostruthus taczanowskii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Onychostruthus
    Orthologs
    human mouse all
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    Genomic context

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    See PSMD4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024500117.1 (28761..57882, complement)

    NW_024500117.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase beta-like Neighboring gene zinc finger protein 687 Neighboring gene uncharacterized LOC121337556 Neighboring gene vacuolar protein sorting 72 homolog Neighboring gene tropomodulin-4-like Neighboring gene sodium channel modifier 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024500117 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1759005v1 Primary Assembly

    Genomic

    1. NW_024500117.1 Reference ASM1759005v1 Primary Assembly

      Range
      28761..57882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041407704.1 → XP_041263638.1  26S proteasome non-ATPase regulatory subunit 4

      Conserved Domains (3) summary
      PHA03307
      Location:465 → 581
      PHA03307; transcriptional regulator ICP4; Provisional
      cd01452
      Location:601 → 787
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...
      cl28923
      Location:95 → 462
      PIPKc; Phosphatidylinositol phosphate kinase (PIPK) catalytic domain family
    Nucleotide Protein
    Heading Accession and Version

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