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    SGCD sarcoglycan delta [ Rana temporaria (common frog) ]

    Gene ID: 120932590, updated on 21-Mar-2024

    Summary

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    Gene symbol
    SGCD
    Gene description
    sarcoglycan delta
    See related
    EnsemblRapid:ENSRTEG00010032921
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rana temporaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
    Orthologs
    human mouse all
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    Genomic context

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    See SGCD in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current aRanTem1.1 (GCF_905171775.1) 3 NC_053491.1 (337891953..338497325, complement)

    Chromosome 3 - NC_053491.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene mediator complex subunit 7 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053491.1 Chromosome 3 Reference aRanTem1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRanTem1.1

    Genomic

    1. NC_053491.1 Reference aRanTem1.1

      Range
      337891953..338497325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040345086.1 → XP_040201020.1  delta-sarcoglycan

    2. XM_040345085.1 → XP_040201019.1  delta-sarcoglycan

      Related
      ENSRTEP00010041164.1, ENSRTET00010055146.1
    Nucleotide Protein
    Heading Accession and Version

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