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    LOC11426586 uncharacterized LOC11426586 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11426586, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11426586
    Gene description
    uncharacterized LOC11426586
    Locus tag
    MtrunA17_Chr8g0380161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11426586 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (40526265..40537284)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (36447234..36458254)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene stachyose synthase-like Neighboring gene uncharacterized LOC11418018 Neighboring gene ubiquitin-40S ribosomal protein S27a Neighboring gene sulfite exporter TauE/SafE family protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC11426586
    Names
    putative tetratricopeptide-like helical domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      40526265..40537284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039828561.1 → XP_039684495.1  uncharacterized protein LOC11426586 isoform X1

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    2. XM_039828563.1 → XP_039684497.1  uncharacterized protein LOC11426586 isoform X4

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    3. XM_039828562.1 → XP_039684496.1  uncharacterized protein LOC11426586 isoform X2

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    4. XM_003629846.3 → XP_003629894.2  uncharacterized protein LOC11426586 isoform X3

      UniProtKB/TrEMBL
      A0A072TT59, A0A0C3Y527, G7L813
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    5. XM_013591222.2 → XP_013446676.1  uncharacterized protein LOC11426586 isoform X5

      UniProtKB/TrEMBL
      A0A072TT59, A0A072TV09
      Conserved Domains (1) summary
      smart00386
      Location:297 → 329
      HAT; HAT (Half-A-TPR) repeats

    6. XM_039828564.1 → XP_039684498.1  uncharacterized protein LOC11426586 isoform X6

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:223 → 255
      HAT; HAT (Half-A-TPR) repeats

    7. XM_039828565.1 → XP_039684499.1  uncharacterized protein LOC11426586 isoform X6

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:223 → 255
      HAT; HAT (Half-A-TPR) repeats

    8. XM_039828566.1 → XP_039684500.1  uncharacterized protein LOC11426586 isoform X7

      UniProtKB/TrEMBL
      A0A072TT59
      Conserved Domains (1) summary
      smart00386
      Location:87 → 119
      HAT; HAT (Half-A-TPR) repeats
    Nucleotide Protein
    Heading Accession and Version

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