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    tgfb5 transforming growth factor, beta 5 [ Polypterus senegalus (gray bichir) ]

    Gene ID: 120539363, updated on 8-May-2024

    Summary

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    Gene symbol
    tgfb5
    Gene description
    transforming growth factor, beta 5
    Locus tag
    GTO96_0004634
    See related
    EnsemblRapid:ENSSTSG00000010928
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Polypterus senegalus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
    Also known as
    Tgfb2
    Orthologs
    zebrafish all
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    Genomic context

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    See tgfb5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM1683550v1 (GCF_016835505.1) 11 NC_053164.1 (99788356..99854805, complement)

    Chromosome 11 - NC_053164.1Genomic Context describing neighboring genes Neighboring gene centromere protein F Neighboring gene potassium channel subfamily K member 4-like Neighboring gene estrogen-related receptor alpha Neighboring gene tRNA methyltransferase subunit 11-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053164.1 Chromosome 11 Reference ASM1683550v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables type II transforming growth factor beta receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables type III transforming growth factor beta receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transforming growth factor beta-2 proprotein
    Names
    TGFB2 factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1683550v1 Primary Assembly

    Genomic

    1. NC_053164.1 Reference ASM1683550v1 Primary Assembly

      Range
      99788356..99854805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039769361.1 → XP_039625295.1  transforming growth factor beta-2 proprotein

      Related
      ENSSTSP00000023549.1, ENSSTST00000027025.1
      Conserved Domains (1) summary
      cl40434
      Location:309 → 405
      TGF_beta_SF; transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily
    Nucleotide Protein
    Heading Accession and Version

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