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    DDX4 DEAD-box helicase 4 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120407777, updated on 21-Mar-2024

    Summary

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    Gene symbol
    DDX4
    Gene description
    DEAD-box helicase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See DDX4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    23
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 6 NC_052628.1 (33160819..33265711)

    Linkage Group 6 - NC_052628.1Genomic Context describing neighboring genes Neighboring gene Mtr4 exosome RNA helicase Neighboring gene phospholipid phosphatase 1 Neighboring gene solute carrier family 38 member 9 Neighboring gene U1 spliceosomal RNA Neighboring gene interleukin 31 receptor A Neighboring gene interleukin 6 cytokine family signal transducer

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052628.1 Chromosome 6 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052628.1 Reference ASM1616193v1 Primary Assembly

      Range
      33160819..33265711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039543827.1 → XP_039399761.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    2. XM_039543828.1 → XP_039399762.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    3. XM_039543825.1 → XP_039399759.1  probable ATP-dependent RNA helicase DDX4 isoform X1

      Conserved Domains (2) summary
      cd18787
      Location:480 → 609
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:211 → 474
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4

    4. XM_039543826.1 → XP_039399760.1  probable ATP-dependent RNA helicase DDX4 isoform X2

      Conserved Domains (2) summary
      cd18787
      Location:478 → 607
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd18052
      Location:209 → 472
      DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
    Nucleotide Protein
    Heading Accession and Version

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