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    LOC120085050 pre-rRNA-processing protein TSR2 homolog [ Benincasa hispida (wax gourd) ]

    Gene ID: 120085050, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120085050
    Gene description
    pre-rRNA-processing protein TSR2 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120085050 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 9 NC_052357.1 (66816063..66819793, complement)

    Chromosome 9 - NC_052357.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 7-like Neighboring gene O-fucosyltransferase 7-like Neighboring gene uncharacterized LOC120086706 Neighboring gene homeobox-leucine zipper protein ATHB-6-like Neighboring gene queuine tRNA-ribosyltransferase catalytic subunit 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052357.1 Chromosome 9 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-rRNA-processing protein TSR2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052357.1 Reference ASM972705v1

      Range
      66816063..66819793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039040887.1 → XP_038896815.1  pre-rRNA-processing protein TSR2 homolog

      Conserved Domains (1) summary
      pfam10273
      Location:15 → 94
      WGG; Pre-rRNA-processing protein TSR2
    Nucleotide Protein
    Heading Accession and Version

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