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    LOC120083874 glucan endo-1,3-beta-glucosidase [ Benincasa hispida (wax gourd) ]

    Gene ID: 120083874, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120083874
    Gene description
    glucan endo-1,3-beta-glucosidase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120083874 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 8 NC_052356.1 (19921535..19924703)

    Chromosome 8 - NC_052356.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL10 Neighboring gene methyl-CpG-binding domain-containing protein 6 Neighboring gene E3 ubiquitin-protein ligase ATL41-like Neighboring gene secreted RxLR effector protein 161-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052356.1 Chromosome 8 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-glucosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052356.1 Reference ASM972705v1

      Range
      19921535..19924703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039039778.1 → XP_038895706.1  glucan endo-1,3-beta-glucosidase isoform X3

      Conserved Domains (1) summary
      cl23725
      Location:25 → 337
      Glyco_hydro; Glycosyl hydrolases

    2. XM_039039776.1 → XP_038895704.1  glucan endo-1,3-beta-glucosidase isoform X1

      Conserved Domains (2) summary
      smart00768
      Location:373 → 457
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:25 → 337
      Glyco_hydro; Glycosyl hydrolases

    3. XM_039039777.1 → XP_038895705.1  glucan endo-1,3-beta-glucosidase isoform X2

      Conserved Domains (2) summary
      smart00768
      Location:363 → 447
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:25 → 337
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version

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