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    LOC120081514 putative pentatricopeptide repeat-containing protein At1g13630 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120081514, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120081514
    Gene description
    putative pentatricopeptide repeat-containing protein At1g13630
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120081514 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 7 NC_052355.1 (42634344..42645162, complement)

    Chromosome 7 - NC_052355.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120081180 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene UDP-glycosyltransferase 89A2-like Neighboring gene DNA-3-methyladenine glycosylase 1 Neighboring gene phosphatidylinositol 4-kinase gamma 7-like Neighboring gene uncharacterized LOC120082161

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052355.1 Chromosome 7 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pentatricopeptide repeat-containing protein At1g13630

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052355.1 Reference ASM972705v1

      Range
      42634344..42645162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039036465.1 → XP_038892393.1  putative pentatricopeptide repeat-containing protein At1g13630 isoform X2

      Conserved Domains (5) summary
      PLN03218
      Location:116 → 559
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:630 → 662
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00006
      Location:346 → 376
      TPR; TPR repeat [structural motif]
      sd00004
      Location:384 → 411
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:240 → 289
      PPR_2; PPR repeat family

    2. XM_039036463.1 → XP_038892391.1  putative pentatricopeptide repeat-containing protein At1g13630 isoform X1

      Conserved Domains (5) summary
      PLN03218
      Location:253 → 696
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:767 → 799
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00006
      Location:483 → 513
      TPR; TPR repeat [structural motif]
      sd00004
      Location:521 → 548
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:377 → 426
      PPR_2; PPR repeat family

    3. XM_039036464.1 → XP_038892392.1  putative pentatricopeptide repeat-containing protein At1g13630 isoform X1

      Conserved Domains (5) summary
      PLN03218
      Location:253 → 696
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:767 → 799
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00006
      Location:483 → 513
      TPR; TPR repeat [structural motif]
      sd00004
      Location:521 → 548
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:377 → 426
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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