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    LOC120079657 ankyrin repeat domain-containing protein 13A [ Benincasa hispida (wax gourd) ]

    Gene ID: 120079657, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120079657
    Gene description
    ankyrin repeat domain-containing protein 13A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120079657 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 6 NC_052354.1 (30305187..30311643, complement)

    Chromosome 6 - NC_052354.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 12 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120079490 Neighboring gene uncharacterized LOC120079658 Neighboring gene diphthine--ammonia ligase Neighboring gene GDT1-like protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052354.1 Chromosome 6 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 13A; uncharacterized protein LOC120079657

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052354.1 Reference ASM972705v1

      Range
      30305187..30311643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039033930.1 → XP_038889858.1  uncharacterized protein LOC120079657 isoform X1

      Conserved Domains (3) summary
      sd00045
      Location:7 → 64
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:184 → 617
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:67 → 108
      Ank_5; Ankyrin repeats (many copies)

    2. XM_039033931.1 → XP_038889859.1  ankyrin repeat domain-containing protein 13A isoform X2

      Conserved Domains (3) summary
      sd00045
      Location:7 → 64
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:184 → 532
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:67 → 108
      Ank_5; Ankyrin repeats (many copies)

    3. XM_039033932.1 → XP_038889860.1  ankyrin repeat domain-containing protein 13A isoform X2

      Conserved Domains (3) summary
      sd00045
      Location:7 → 64
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:184 → 532
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:67 → 108
      Ank_5; Ankyrin repeats (many copies)

    RNA

    1. XR_005482308.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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