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    LOC120076446 probable aquaporin PIP2-5 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120076446, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120076446
    Gene description
    probable aquaporin PIP2-5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120076446 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 4 NC_052352.1 (34531209..34536393, complement)

    Chromosome 4 - NC_052352.1Genomic Context describing neighboring genes Neighboring gene exopolygalacturonase-like Neighboring gene tyrosine-specific transport protein 1-like Neighboring gene mannan endo-1,4-beta-mannosidase 6 Neighboring gene mRNA-decapping enzyme subunit 2-like Neighboring gene uncharacterized LOC120076811

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052352.1 Chromosome 4 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin PIP2-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052352.1 Reference ASM972705v1

      Range
      34531209..34536393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039030280.1 → XP_038886208.1  probable aquaporin PIP2-5

      Conserved Domains (1) summary
      pfam00230
      Location:51 → 288
      MIP; Major intrinsic protein
    Nucleotide Protein
    Heading Accession and Version

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