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    LOC120091894 glucan endo-1,3-beta-glucosidase 13 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120091894, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120091894
    Gene description
    glucan endo-1,3-beta-glucosidase 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120091894 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 11 NC_052359.1 (13350685..13352879, complement)

    Chromosome 11 - NC_052359.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120091023 Neighboring gene ethylene-responsive transcription factor 3 Neighboring gene small ubiquitin-related modifier 1 Neighboring gene endoglucanase 11-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052359.1 Chromosome 11 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-glucosidase 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052359.1 Reference ASM972705v1

      Range
      13350685..13352879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039050052.1 → XP_038905980.1  glucan endo-1,3-beta-glucosidase 13

      Conserved Domains (2) summary
      smart00768
      Location:368 → 453
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:24 → 343
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version

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