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    LOC120091010 pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like [ Benincasa hispida (wax gourd) ]

    Gene ID: 120091010, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120091010
    Gene description
    pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120091010 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 11 NC_052359.1 (66231123..66243078)

    Chromosome 11 - NC_052359.1Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster co-chaperone protein HscB homolog Neighboring gene uncharacterized LOC120090818 Neighboring gene putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052359.1 Chromosome 11 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052359.1 Reference ASM972705v1

      Range
      66231123..66243078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039048791.1 → XP_038904719.1  pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like

      Conserved Domains (4) summary
      PLN03218
      Location:146 → 484
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:580 → 613
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:271 → 297
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:647 → 693
      PPR_2; PPR repeat family

    2. XM_039048790.1 → XP_038904718.1  pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like

      Conserved Domains (4) summary
      PLN03218
      Location:146 → 484
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:580 → 613
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:271 → 297
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:647 → 693
      PPR_2; PPR repeat family

    3. XM_039048789.1 → XP_038904717.1  pentatricopeptide repeat-containing protein At1g62914, mitochondrial-like

      Conserved Domains (4) summary
      PLN03218
      Location:146 → 484
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:580 → 613
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:271 → 297
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:647 → 693
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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