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    LOC120092040 auxin response factor 9 [ Benincasa hispida (wax gourd) ]

    Gene ID: 120092040, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120092040
    Gene description
    auxin response factor 9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120092040 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 1 NC_052349.1 (73686323..73690224)

    Chromosome 1 - NC_052349.1Genomic Context describing neighboring genes Neighboring gene DCD domain-containing protein NRP-B Neighboring gene uncharacterized LOC120090877 Neighboring gene cellulose synthase-like protein G3 Neighboring gene cellulose synthase-like protein G3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052349.1 Chromosome 1 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052349.1 Reference ASM972705v1

      Range
      73686323..73690224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039050233.1 → XP_038906161.1  auxin response factor 9

      Conserved Domains (3) summary
      pfam02309
      Location:590 → 664
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:129 → 229
      B3; B3 DNA binding domain
      pfam06507
      Location:255 → 333
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version

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