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    LOC120061690 host cell factor 1-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120061690, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120061690
    Gene description
    host cell factor 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120061690 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 16 NC_052322.1 (42706795..42758335, complement)

    Chromosome 16 - NC_052322.1Genomic Context describing neighboring genes Neighboring gene aerolysin-like protein Neighboring gene sodium-dependent neutral amino acid transporter SLC6A17-like Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene methyl-CpG-binding protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052322.1 Chromosome 16 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052322.1 Reference SaNama_1.0 Primary Assembly

      Range
      42706795..42758335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039011584.1 → XP_038867512.1  host cell factor 1-like

      UniProtKB/TrEMBL
      A0A8U1H303
      Conserved Domains (4) summary
      PLN02153
      Location:7 → 321
      PLN02153; epithiospecifier protein
      sd00038
      Location:192 → 241
      Kelch; KELCH repeat [structural motif]
      pfam05109
      Location:363 → 729
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam13854
      Location:307 → 339
      Kelch_5; Kelch motif
    Nucleotide Protein
    Heading Accession and Version

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