U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC120056086 TOX high mobility group box family member 4-A-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120056086, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120056086
    Gene description
    TOX high mobility group box family member 4-A-like
    See related
    EnsemblRapid:ENSSNMG00000016083
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120056086 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 11 NC_052317.1 (34114999..34121777, complement)

    Chromosome 11 - NC_052317.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120055369 Neighboring gene uncharacterized LOC120056084 Neighboring gene chromodomain-helicase-DNA-binding protein 8-like Neighboring gene zinc finger BED-type containing X

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052317.1 Chromosome 11 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TOX high mobility group box family member 4-A-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052317.1 Reference SaNama_1.0 Primary Assembly

      Range
      34114999..34121777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039004248.1 → XP_038860176.1  TOX high mobility group box family member 4-A-like isoform X6

      UniProtKB/TrEMBL
      A0A8U1EUM2
      Conserved Domains (2) summary
      PHA03247
      Location:473 → 597
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:278 → 343
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    2. XM_039004247.1 → XP_038860175.1  TOX high mobility group box family member 4-A-like isoform X5

      UniProtKB/TrEMBL
      A0A8U1EQC6
      Related
      ENSSNMP00000020599.1, ENSSNMT00000024109.1
      Conserved Domains (2) summary
      PHA03247
      Location:474 → 598
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:279 → 344
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    3. XM_039004246.1 → XP_038860174.1  TOX high mobility group box family member 4-A-like isoform X4

      UniProtKB/TrEMBL
      A0A8U1C275
      Related
      ENSSNMP00000020590.1, ENSSNMT00000024100.1
      Conserved Domains (2) summary
      PHA03247
      Location:494 → 618
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:299 → 364
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    4. XM_039004243.1 → XP_038860171.1  TOX high mobility group box family member 4-A-like isoform X1

      UniProtKB/TrEMBL
      A0A8U1BT45
      Conserved Domains (3) summary
      PHA03247
      Location:507 → 631
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:312 → 377
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
      pfam03154
      Location:377 → 571
      Atrophin-1; Atrophin-1 family

    5. XM_039004245.1 → XP_038860173.1  TOX high mobility group box family member 4-A-like isoform X3

      UniProtKB/TrEMBL
      A0A8U1ENL3
      Conserved Domains (3) summary
      PHA03247
      Location:506 → 630
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:311 → 376
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
      pfam03154
      Location:376 → 570
      Atrophin-1; Atrophin-1 family

    6. XM_039004244.1 → XP_038860172.1  TOX high mobility group box family member 4-A-like isoform X2

      UniProtKB/TrEMBL
      A0A8U1ESU7
      Conserved Domains (3) summary
      PHA03247
      Location:506 → 630
      PHA03247; large tegument protein UL36; Provisional
      cd00084
      Location:311 → 376
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
      pfam03154
      Location:376 → 570
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases