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    SHOC2 SHOC2 leucine rich repeat scaffold protein [ Canis lupus familiaris (dog) ]

    Gene ID: 477819, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SHOC2provided by VGNC
    Official Full Name
    SHOC2 leucine rich repeat scaffold proteinprovided by VGNC
    Primary source
    VGNC:VGNC:46152
    See related
    Ensembl:ENSCAFG00845029169
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SHOC2 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (22766445..22863097)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (22393960..22490541)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (22466604..22563246)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (22325648..22422221)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (22332434..22429036)

    Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene RNA binding motif protein 20 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1 Neighboring gene adrenoceptor alpha 2A Neighboring gene uncharacterized LOC111093044

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat protein SHOC-2
    Names
    soc-2 suppressor of clear homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051832.1 Reference ROS_Cfam_1.0

      Range
      22766445..22863097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038440546.1 → XP_038296474.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038440545.1 → XP_038296473.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Related
      ENSCAFP00845040506.1, ENSCAFT00845051625.1
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038440547.1 → XP_038296475.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049288.1 Alternate UMICH_Zoey_3.1

      Range
      22325648..22422221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038515174.1 → XP_038371102.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038515173.1 → XP_038371101.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038515175.1 → XP_038371103.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

      Range
      22332434..22429036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038642957.1 → XP_038498885.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038642956.1 → XP_038498884.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038642958.1 → XP_038498886.1  leucine-rich repeat protein SHOC-2

      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

      Range
      22466604..22563246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038578776.1 → XP_038434704.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038578775.1 → XP_038434703.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038578777.1 → XP_038434705.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      22393960..22490541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005637720.4 → XP_005637777.1  leucine-rich repeat protein SHOC-2

      See identical proteins and their annotated locations for XP_005637777.1

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_535013.7 → XP_535013.2  leucine-rich repeat protein SHOC-2

      See identical proteins and their annotated locations for XP_535013.2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038460475.1 → XP_038316403.1  leucine-rich repeat protein SHOC-2

      UniProtKB/TrEMBL
      A0A8C0KGN5, A0A8C0P3Q4, A0A8I3PZC2
      Conserved Domains (3) summary
      PLN03150
      Location:453 → 527
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:115 → 483
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:240 → 262
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
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