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    CHMP5 charged multivesicular body protein 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 474741, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHMP5provided by VGNC
    Official Full Name
    charged multivesicular body protein 5provided by VGNC
    Primary source
    VGNC:VGNC:103666
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CHMP5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (51303746..51316362)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (48993418..49006028)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (50600163..50612779)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (49967854..49980464)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (49835048..49847662)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119874047 Neighboring gene U6 spliceosomal RNA Neighboring gene serine peptidase inhibitor Kazal type 4 Neighboring gene BAG cochaperone 1 Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene uncharacterized LOC111098081 Neighboring gene aquaporin 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle budding from membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    charged multivesicular body protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      51303746..51316362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038681931.1 → XP_038537859.1  charged multivesicular body protein 5

      UniProtKB/TrEMBL
      A0A8C0KSY6, A0A8C0MIX2, A0A8P0NS69
      Conserved Domains (1) summary
      cl21588
      Location:1 → 201
      Snf7

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      49967854..49980464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490490.1 → XP_038346418.1  charged multivesicular body protein 5

      Conserved Domains (1) summary
      cl21588
      Location:1 → 201
      Snf7

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      49835048..49847662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616460.1 → XP_038472388.1  charged multivesicular body protein 5

      Conserved Domains (1) summary
      cl21588
      Location:1 → 201
      Snf7

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      50600163..50612779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552600.1 → XP_038408528.1  charged multivesicular body protein 5

      UniProtKB/TrEMBL
      A0A8C0KSY6, A0A8C0MIX2, A0A8P0NS69
      Conserved Domains (1) summary
      cl21588
      Location:1 → 201
      Snf7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      48993418..49006028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_531972.7 → XP_531972.3  charged multivesicular body protein 5

      See identical proteins and their annotated locations for XP_531972.3

      UniProtKB/TrEMBL
      A0A8C0KSY6, A0A8C0MIX2, A0A8P0NS69
      Conserved Domains (1) summary
      cl21588
      Location:1 → 201
      Snf7
    Nucleotide Protein
    Heading Accession and Version

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