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    Phf21b PHD finger protein 21B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300117, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Phf21bprovided by RGD
    Official Full Name
    PHD finger protein 21Bprovided by RGD
    Primary source
    RGD:1308739
    See related
    EnsemblRapid:ENSRNOG00000013067 AllianceGenome:RGD:1308739
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308739
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human PHF21B (PHD finger protein 21B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 12.8), Spleen (RPKM 10.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Phf21b in Genome Data Viewer
    Location:
    7q34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (117793643..117864141, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (115913704..115984215, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125649688..125720694)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene proline rich 5 Neighboring gene Rho GTPase activating protein 8 Neighboring gene nucleoporin 50 Neighboring gene KIAA0930 homolog Neighboring gene microRNA 1249

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PHD finger protein 21B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130680.1 → NP_001124152.1  PHD finger protein 21B

      See identical proteins and their annotated locations for NP_001124152.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473950
      UniProtKB/TrEMBL
      A6HTC4, D4A9U0
      Related
      ENSRNOP00000017906.5, ENSRNOT00000017906.8
      Conserved Domains (1) summary
      cl22851
      Location:309 → 351
      PHD_SF; PHD finger superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      117793643..117864141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008765685.3 → XP_008763907.2  PHD finger protein 21B isoform X1

      Related
      ENSRNOP00000104335.1, ENSRNOT00000129997.1
      Conserved Domains (2) summary
      PHA03247
      Location:15 → 279
      PHA03247; large tegument protein UL36; Provisional
      cl22851
      Location:355 → 397
      PHD_SF; PHD finger superfamily

    2. XM_039078846.2 → XP_038934774.1  PHD finger protein 21B isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:17 → 218
      PHA03247; large tegument protein UL36; Provisional
      COG5118
      Location:190 → 310
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
    Nucleotide Protein Strain
    Heading Accession and Version

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