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    EXOSC1 exosome component 1 [ Anas platyrhynchos (mallard) ]

    Gene ID: 119717299, updated on 21-Mar-2024

    Summary

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    Gene symbol
    EXOSC1
    Gene description
    exosome component 1
    See related
    EnsemblRapid:ENSAPLG00030018142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See EXOSC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 6 NC_051777.1 (23257063..23258398)

    Chromosome 6 - NC_051777.1Genomic Context describing neighboring genes Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene phosphoglycerate mutase 1 Neighboring gene ribosomal RNA processing 12 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051777.1 Chromosome 6 Reference ZJU1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component CSL4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051777.1 Reference ZJU1.0 Primary Assembly

      Range
      23257063..23258398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038181010.1 → XP_038036938.1  exosome complex component CSL4

      Related
      ENSAPLP00030030319.1, ENSAPLT00030046950.1
      Conserved Domains (2) summary
      cd05791
      Location:62 → 154
      S1_CSL4; CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam14382
      Location:8 → 39
      ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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